cellTypesPerCluster: Cell Types per Cluster

In WeiSong-bio/roryk-bcbioSinglecell: Single-Cell RNA-Seq Utilities

Description

Cell Types per Cluster

Usage

cellTypesPerCluster(object, ...)

## S4 method for signature 'grouped_df'
cellTypesPerCluster(object, min = 1L, max = Inf)

Arguments

object	Object.
...	Additional arguments.
min	Minimum number of marker genes per cluster.
max	Maximum number of marker genes per cluster.

Value

grouped_df grouped by "cluster", containing the count (n) of significant known makers per cell type.

Author(s)

Michael Steinbaugh

See Also

Other Clustering Functions: knownMarkersDetected, plotCellTypesPerCluster, plotFeatureTSNE, plotKnownMarkersDetected, plotPCElbow, plotTSNE, sanitizeMarkers, topMarkers

Examples

# grouped_df ====
x <- cellTypesPerCluster(known_markers_small)
glimpse(x)

WeiSong-bio/roryk-bcbioSinglecell documentation built on July 6, 2019, 12:03 a.m.