cellTypesPerCluster: Cell Types per Cluster

Description Usage Arguments Value Author(s) See Also Examples

Description

Cell Types per Cluster

Usage

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cellTypesPerCluster(object, ...)

## S4 method for signature 'grouped_df'
cellTypesPerCluster(object, min = 1L, max = Inf)

Arguments

object

Object.

...

Additional arguments.

min

Minimum number of marker genes per cluster.

max

Maximum number of marker genes per cluster.

Value

grouped_df grouped by "cluster", containing the count (n) of significant known makers per cell type.

Author(s)

Michael Steinbaugh

See Also

Other Clustering Functions: knownMarkersDetected, plotCellTypesPerCluster, plotFeatureTSNE, plotKnownMarkersDetected, plotPCElbow, plotTSNE, sanitizeMarkers, topMarkers

Examples

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# grouped_df ====
x <- cellTypesPerCluster(known_markers_small)
glimpse(x)

WeiSong-bio/roryk-bcbioSinglecell documentation built on July 6, 2019, 12:03 a.m.