plotUMIsVsGenes: Plot UMI and Gene Correlation

In WeiSong-bio/roryk-bcbioSinglecell: Single-Cell RNA-Seq Utilities

Description

Plot UMI and Gene Correlation

Usage

plotUMIsVsGenes(object, ...)

## S4 method for signature 'SingleCellExperiment'
plotUMIsVsGenes(object, interestingGroups,
  trendline = FALSE, color = scale_color_hue(), trans = "log2",
  title = "UMIs vs. genes")

## S4 method for signature 'seurat'
plotUMIsVsGenes(object, interestingGroups,
  trendline = FALSE, color = scale_color_hue(), trans = "log2",
  title = "UMIs vs. genes")

Arguments

object	Object.
...	Additional arguments.
interestingGroups	Character vector of interesting groups. Must be formatted in camel case and intersect with sampleData() colnames.
trendline	Include trendline on plot.
color	Desired ggplot color scale. Must supply discrete values. When set to NULL, the default ggplot2 color palette will be used. If manual color definitions are desired, we recommend using ggplot2::scale_color_manual().
trans	Name of the axis scale transformation to apply. See help("scale_x_continuous", "ggplot2") for more information.
title	Plot title.

Value

ggplot.

Author(s)

Michael Steinbaugh, Rory Kirchner

Examples

# SingleCellExperiment ====
plotUMIsVsGenes(cellranger_small)

WeiSong-bio/roryk-bcbioSinglecell documentation built on July 6, 2019, 12:03 a.m.