plotGene: Plot Gene

In WeiSong-bio/roryk-bcbioSinglecell: Single-Cell RNA-Seq Utilities

Description

Plot Gene

Usage

## S4 method for signature 'SingleCellExperiment'
plotGene(object, genes, geom = c("dot",
  "violin"), legend = FALSE)

## S4 method for signature 'seurat'
plotGene(object, genes, geom = c("dot", "violin"),
  legend = FALSE)

Arguments

object	Object.
genes	Gene identifiers. Must match the rownames of the object.
geom	Plot type. Uses match.arg() to pick the type. Currently supports "dot" and "violin".
legend	Include plot legend.

Value

ggplot.

Author(s)

Michael Steinbaugh

See Also

• plotDot(), Seurat::DotPlot().

• plotViolin(), Seurat::VlnPlot().

• Seurat::RidgePlot().

Other Gene Expression Functions: plotDot, plotViolin

Examples

object <- seurat_small
genes <- head(rownames(object))

# Dot
plotGene(object, genes = genes, geom = "dot")

# Violin
plotGene(object, genes = genes, geom = "violin")

WeiSong-bio/roryk-bcbioSinglecell documentation built on July 6, 2019, 12:03 a.m.