readCellTypeMarkers: Read Cell Type Markers File
In WeiSong-bio/roryk-bcbioSinglecell: Single-Cell RNA-Seq Utilities
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Read Cell Type Markers File
Usage
1
readCellTypeMarkers(file, gene2symbol)
Arguments
file
Gene markers file (CSV or Excel).
gene2symbol
data.frame containing gene-to-symbol mappings. Columns
must contain geneID and geneName.
Value
grouped_df, grouped by "cellType" column.
Author(s)
Michael Steinbaugh
See Also
Other Read Functions: readCellRanger
Examples
1
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5
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# Homo sapiens
file <- system.file(
file.path("extdata", "cell_type_markers.csv"),
package = "bcbioSingleCell"
)
gene2symbol <- makeGene2symbolFromEnsembl("Homo sapiens")
readCellTypeMarkers(file, gene2symbol = gene2symbol)
WeiSong-bio/roryk-bcbioSinglecell documentation built on July 6, 2019, 12:03 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Read Cell Type Markers File
Usage
1 | readCellTypeMarkers(file, gene2symbol)
|
Arguments
file |
Gene markers file (CSV or Excel). |
gene2symbol |
|
Value
grouped_df, grouped by "cellType" column.
Author(s)
Michael Steinbaugh
See Also
Other Read Functions: readCellRanger
Examples
1 2 3 4 5 6 7 | # Homo sapiens
file <- system.file(
file.path("extdata", "cell_type_markers.csv"),
package = "bcbioSingleCell"
)
gene2symbol <- makeGene2symbolFromEnsembl("Homo sapiens")
readCellTypeMarkers(file, gene2symbol = gene2symbol)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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