plotCellCounts: Plot Cell Counts
In WeiSong-bio/roryk-bcbioSinglecell: Single-Cell RNA-Seq Utilities
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Plot Cell Counts
Usage
1
2
3
4
5
plotCellCounts(object, ...)
## S4 method for signature 'SingleCellExperiment'
plotCellCounts(object, interestingGroups,
fill = NULL, title = "cell counts")
Arguments
object
Object.
...
Additional arguments.
interestingGroups
Character vector of interesting groups. Must be
formatted in camel case and intersect with sampleData() colnames.
fill
Desired ggplot fill scale. Must supply discrete values. When set
to NULL, the default ggplot2 color palette will be used. If manual color
definitions are desired, we recommend using ggplot2::scale_fill_manual().
title
Plot title.
Value
ggplot.
Author(s)
Michael Steinbaugh, Rory Kirchner
See Also
Other Quality Control Functions: barcodeRanksPerSample,
filterCells, metrics,
plotGenesPerCell,
plotMitoRatio,
plotMitoVsCoding,
plotNovelty, plotQC,
plotReadsPerCell,
plotUMIsPerCell,
plotZerosVsDepth
Examples
1
2
# SingleCellExperiment ====
plotCellCounts(cellranger_small)
WeiSong-bio/roryk-bcbioSinglecell documentation built on July 6, 2019, 12:03 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Plot Cell Counts
Usage
1 2 3 4 5 | plotCellCounts(object, ...)
## S4 method for signature 'SingleCellExperiment'
plotCellCounts(object, interestingGroups,
fill = NULL, title = "cell counts")
|
Arguments
object |
Object. |
... |
Additional arguments. |
interestingGroups |
Character vector of interesting groups. Must be
formatted in camel case and intersect with |
fill |
Desired ggplot fill scale. Must supply discrete values. When set
to |
title |
Plot title. |
Value
ggplot.
Author(s)
Michael Steinbaugh, Rory Kirchner
See Also
Other Quality Control Functions: barcodeRanksPerSample,
filterCells, metrics,
plotGenesPerCell,
plotMitoRatio,
plotMitoVsCoding,
plotNovelty, plotQC,
plotReadsPerCell,
plotUMIsPerCell,
plotZerosVsDepth
Examples
1 2 | # SingleCellExperiment ====
plotCellCounts(cellranger_small)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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