Files in XHWUlab/PolyAtailor
a toolkit for analyzing poly(A) tail length dynamics from xxx RNA-seq data
DESCRIPTION
NAMESPACE
R/PolyAtailor.R
R/funclib_plot.R
R/funclib_polyAtailor.R
R/infomerge.R
README.md
data/AnnotedTails.rda
data/GV1tailDF.rda
data/GV1tailMapre.rda
data/PAcds.rda
data/PAs.rda
data/datalist
data/faBuilderRE.rda
data/re.rda
data/taildf.rda
inst/extdata/GRCH38_referenc_report.txt
inst/extdata/GV_algin/GV1subseq.sorted.bam
inst/extdata/GV_algin/GV1subseq.sorted.bam.bai
inst/extdata/GV_algin/PAIso-GV1.sorted.bam
inst/extdata/GV_algin/PAIso-GV1.sorted.bam.bai
inst/extdata/GV_algin/chrinfo.txt
inst/extdata/GV_fastq/PAIso_GV1.zip
inst/extdata/GV_fastq/README.md
inst/extdata/figures/GenePAN.png
inst/extdata/figures/PAL_dis_gene.png
inst/extdata/figures/PAL_dis_gobal.png
inst/extdata/figures/PAsDis.png
inst/extdata/figures/PAsignals.png
inst/extdata/figures/dePAL.png
inst/extdata/figures/nonA_p2.png
inst/extdata/figures/nonA_p3.png
inst/extdata/figures/nonAdis.png
inst/extdata/figures/polyAvis.png
inst/extdata/hg19_reference_report.txt
inst/extdata/output/PAs/PAs.txt
inst/extdata/output/PAs/PAs_withoutMerge_pac_data.coldata.txt
inst/extdata/output/PAs/PAs_withoutMerge_pac_data.txt
inst/extdata/output/PAs/PAspac_data.coldata.txt
inst/extdata/output/PAs/PAspac_data.txt
inst/extdata/output/nonAinfo.txt
inst/extdata/output/tailvis.fasta
man/DSA_UpsetPlot.Rd
man/DSA_ViolinPlot.Rd
man/PALdsa.Rd
man/PASTailMerge.Rd
man/PolyAtailor.Rd
man/ccf.Rd
man/diffPAL2PAgene.Rd
man/diffPALdpPA.Rd
man/faBuilder.Rd
man/findAndAnnoPAs.Rd
man/findChrTails.Rd
man/findPAs.Rd
man/geneAnno.Rd
man/get3UTRAPAds.Rd
man/hello.Rd
man/infomerge.Rd
man/infomerge1.Rd
man/mergePACds.Rd
man/nonAanalysis.Rd
man/plotGenePAnumbers.Rd
man/plotPADistribution.Rd
man/plotPALDistribution.Rd
man/plotPASignals.Rd
man/readChrInfo.Rd
man/readPACds.Rd
man/tailMap.Rd
man/tailScan.Rd
man/tailViso.Rd
overview.png
patch/GenomicRanges.zip
patch/ggmsa.zip
vignettes/PolyAtailor_on_mouse_PACBIO_data.Rmd
vignettes/PolyAtailor_on_mouse_PACBIO_data.html
vignettes/figures/1.png
vignettes/figures/2.png
vignettes/figures/3.png
vignettes/figures/4.png
vignettes/figures/5.png
vignettes/figures/6.png
vignettes/figures/7.png
vignettes/figures/8.png
vignettes/figures/9.png
