R/PolyAtailor.R

In XHWUlab/PolyAtailor: a toolkit for analyzing poly(A) tail length dynamics from xxx RNA-seq data

## package?PolyAtailor
#'  PolyAtailor
#'
#' @description This package provides functions for identifying and quantifying
#'   poly(A) tails of full-length sequencing data from BAM files as well as
#'   difference significance detection.
#' @details This package contains most of the functions required in poly(A) tail
#'   research, including tail recognition from sequence, tail length
#'   calculation, non-A base recognition and quantifying tail, PA site
#'   determination, tail length difference significance detection, basic data
#'   statistics, and so on.
#' @references 
#' Ye W, Liu T, Fu H, et al. movAPA: Modeling and visualization of dynamics of alternative polyadenylation across biological samples[J]. Bioinformatics, 2021, 37(16): 2470-2472.   
#' Liu Y, Nie H, Liu H, et al. Poly (A) inclusive RNA isoform sequencing (PAIso− seq) reveals wide-spread non-adenosine residues within RNA poly (A) tails[J]. Nature communications, 2019, 10(1): 1-13.   
#' Legnini I, Alles J, Karaiskos N, et al. FLAM-seq: full-length mRNA sequencing reveals principles of poly (A) tail length control[J]. Nature methods, 2019, 16(9): 879-886.
#' @docType package
#' @name PolyAtailor
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