Man pages for YeehanXiao/STREAM
STREAM: Spatial Transcriptomics data Analyses and Modeling
| cellphondedb_dotplot | cellphondedb_dotplot |
| cellphoneDBplot | cellphoneDBplot |
| CellQC | Spatial single cell quality control |
| checkcellphonedb | checkcellphonedb |
| CreateSpatTrajectory | Create spatial trajectory. |
| Deconvolution | Deconvolution of Spatial data |
| DiffGenes | Different expression with spatial single |
| dis | calculate the distance from a point to a line |
| DomainPlot | Spatial domain visualization for cluster result. |
| dot_plot | basic cellphonedb dotplot |
| Features | Feature genes |
| filterSEgenes | Filter SE (Spatial differently expressed) genes. |
| FindDEgenes | Find markers (differentially expressed genes) among groups. |
| findPairMarkers | Find markers (differentially expressed genes) between two... |
| GGI | Gene-gene interactions |
| GiottoToSpark | Transform Giotto object to the Spark object |
| Integration | Integration single cell RNA-seq data and spatial single cell... |
| PairwiseData | A list of data used in scRNA-seq data and ST data... |
| processing | Preprocess spatial data |
| proj | Calculate the projection from a point to a directed segment. |
| QCplot | QCplot |
| scHOTplot | scHOTplot |
| Scoreplot | Scoreplot |
| SEdata | A list with tables of SE genes and their corresponding... |
| SEplot | SEgenes plot |
| SEtrajectoryPlot | Feature plot for the spatial trajectory |
| SEvnplot | Venn plot for SE genes from different algorithms |
| SpatCCI | cellphoneDB for spot-population |
| SpatCluster | Kmeans methods to calculate spatial gene expression pattern |
| spotPOPplot | spotPOPplot |
| term2gene | TERM2GENE |
| TrajectFeaturePlot | Feature plot for the spatial trajectory |
