SEtrajectoryPlot: Feature plot for the spatial trajectory

In YeehanXiao/STREAM: STREAM: Spatial Transcriptomics data Analyses and Modeling

Feature plot for the spatial trajectory

Description

Feature plot for the spatial trajectory

Usage

SEtrajectoryPlot(
  object,
  traject,
  span = 0.5,
  SEgenes,
  TrajectoryName = "Example",
  savePlot = TRUE,
  outputFolder = NULL,
  ...
)

Arguments

object	a giotto object
traject	A Data frame, the output from CreateSpatTrajectory
span	Controls the amount of smoothing for the default loess smoother. Smaller numbers produce wigglier lines, larger numbers produce smoother lines.
SEgenes	character
TrajectoryName	The user-specified name for the trajectory.
savePlot	Boolean, whether to save plot.
outputFolder	Output folder to save results. Path in Giotto object will be used when no external dir is provided.

YeehanXiao/STREAM documentation built on Aug. 13, 2022, 6:43 p.m.