spotPOPplot: spotPOPplot

In YeehanXiao/STREAM: STREAM: Spatial Transcriptomics data Analyses and Modeling

spotPOPplot

Description

spotPOPplot

Usage

spotPOPplot(
  object,
  outputFolder = NULL,
  title = "CellPOP",
  meta = object@cell_metadata$leiden,
  legend = "leiden",
  savePlot = FALSE,
  ...
)

Arguments

object	A giotto object
outputFolder	Output folder to save results
title	A character for the title of plot.
meta	A discrete vector to assign color for each spot, e.g., cell type annotation, HMRF result, expression of a certain gene.
legend	A character of feature to divide up cell into sub-populations, e.g. "K-means", "HMRF", "cell type".
savePlot	Boolean, whether to save plot.
...	other arguments

Value

ggplot object

YeehanXiao/STREAM documentation built on Aug. 13, 2022, 6:43 p.m.