GGI: Gene-gene interactions

In YeehanXiao/STREAM: STREAM: Spatial Transcriptomics data Analyses and Modeling

Gene-gene interactions

Description

Gene-gene interactions

gene pair coexpression based on scHOT

Usage

GGI(object, ...)

## S4 method for signature 'giotto'
GGI(object, fdrCutoff = 0.1, numGenes = 20, numCores = 8, ...)

Arguments

object	a giotto object
...	other parameters for scHOT function scHOT
fdrCutoff	FDR value cutoff
numGenes	The number of selected gene pairs
numCores	The number of cores to use

YeehanXiao/STREAM documentation built on Aug. 13, 2022, 6:43 p.m.