Scoreplot: Scoreplot

In YeehanXiao/STREAM: STREAM: Spatial Transcriptomics data Analyses and Modeling

Scoreplot

Description

Visualize the spatial data with a continuous value in each spot, e.g. expression, scHOT score.

Usage

Scoreplot(
  x,
  y,
  outputFolder = NULL,
  title = "Spatplot",
  value,
  legend = "score",
  savePlot = FALSE,
  ...
)

Arguments

x	Numeric, x-coordinate of spatial data.
y	Numeric, y-coordinate of spatial data.
outputFolder	Output folder to save results
title	A character for the title of plot.
value	A vector to assign color for each spot, e.g., cell type annotation, HMRF result, expression of a certain gene.
legend	A character of feature to divide up cell into sub-populations, e.g. "K-means", "HMRF", "cell type".
savePlot	Boolean, whether to save plot.
...	other arguments

Value

ggplot object

YeehanXiao/STREAM documentation built on Aug. 13, 2022, 6:43 p.m.