findPairMarkers: Find markers (differentially expressed genes) between two...
In YeehanXiao/STREAM: STREAM: Spatial Transcriptomics data Analyses and Modeling
findPairMarkers R Documentation
Find markers (differentially expressed genes) between two groups.
Description
Find markers (differentially expressed genes) between two groups.
Usage
findPairMarkers(counts, annotation, group_1, group_2)
Arguments
counts
Either a matrix-like object with un-normalized data with cells as columns and features as rows or an Assay-derived object.
annotation
A data frame of cell types annotation with cell names as rownames and "annot" as the colname. Row-names in the annotation need to match the column names of the counts matrix.
group_1
Character vector of cell types in group_1 for pairwise comparison
group_2
Character vector of cell types in group_2 for pairwise comparison
YeehanXiao/STREAM documentation built on Aug. 13, 2022, 6:43 p.m.
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| findPairMarkers | R Documentation |
Find markers (differentially expressed genes) between two groups.
Description
Find markers (differentially expressed genes) between two groups.
Usage
findPairMarkers(counts, annotation, group_1, group_2)
Arguments
counts |
Either a matrix-like object with un-normalized data with cells as columns and features as rows or an Assay-derived object. |
annotation |
A data frame of cell types annotation with cell names as rownames and "annot" as the colname. Row-names in the annotation need to match the column names of the counts matrix. |
group_1 |
Character vector of cell types in group_1 for pairwise comparison |
group_2 |
Character vector of cell types in group_2 for pairwise comparison |
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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