Man pages for YingMa0107/CARD
Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics
| AssignSCcords | The function to assign the spatial location information for... |
| CARD-class | Each CARD object has a number of slots which store... |
| CARD_deconvolution | Spatially Informed Cell Type Deconvolution for Spatial... |
| CARDfree | SpatialDeconv function based on Conditional Autoregressive... |
| CARDfree-class | Each CARDfree object has a number of slots which store... |
| CARD.imputation | Construct an enhanced spatial expression map on the... |
| CARD-package | Spatially Informed Cell Type Deconvolution for Spatial... |
| CARDref | SpatialDeconv function based on Conditional Autoregressive... |
| CARD_refFree | Extension of CARD into a reference-free version of... |
| CARD_SCMapping | Extension of CARD into performing single cell Mapping from... |
| CARD.visualize.Cor | Visualize the cell type proportion correlation |
| CARD.visualize.gene | Visualize the spatial distribution of cell type proportion |
| CARD.visualize.pie | Visualize the spatial distribution of cell type proportion in... |
| CARD.visualize.prop | Visualize the spatial distribution of cell type proportion |
| CARD.visualize.prop.2CT | Visualize the spatial distribution of two cell type... |
| createCARDfreeObject | Create the CARD object |
| createCARDObject | Create the CARD object |
| createscRef | Construct the mean gene expression basis matrix (B), this is... |
| getHighresCords | The function to sample the spatial location information for... |
| getWeightForCell | The function to estimate the cell type composition signature... |
| hello | A simple function doing little |
| MVN_CV | Imputation and Construction of High-Resolution Spatial Maps... |
| normCoordsTrainTest | Normalize the new spatial locations without changing the... |
| sampleGridWithin | Make new spatial locations on unmeasured tissue through... |
| sc_QC | Quality control of scRNA-seq count data |
| selectInfo | Select Informative Genes used in the deconvolution |
| Sigma | Calculate the variance covariance matrix used in the... |
