CARD-package: Spatially Informed Cell Type Deconvolution for Spatial...
In YingMa0107/CARD: Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics
CARD-package R Documentation
Spatially Informed Cell Type Deconvolution for Spatial
Transcriptomics
Description
CARD is a reference-based deconvolution method that estimates cell type composition in spatial transcriptomics based on cell type specific expression information obtained from a reference scRNA-seq data. A key feature of CARD is its ability to accommodate spatial correlation in the cell type composition across tissue locations, enabling accurate and spatially informed cell type deconvolution as well as refined spatial map construction. CARD relies on an efficient optimization algorithm for constrained maximum likelihood estimation and is scalable to spatial transcriptomics with tens of thousands of spatial locations and tens of thousands of genes. CARD is implemented as an open-source R package, freely available at www.xzlab.org/software.html
Package Content
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Maintainer
Ying Ma <yingma@umich.edu>
Author(s)
Ying Ma
YingMa0107/CARD documentation built on Feb. 14, 2024, 12:23 p.m.
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| CARD-package | R Documentation |
Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics
Description
CARD is a reference-based deconvolution method that estimates cell type composition in spatial transcriptomics based on cell type specific expression information obtained from a reference scRNA-seq data. A key feature of CARD is its ability to accommodate spatial correlation in the cell type composition across tissue locations, enabling accurate and spatially informed cell type deconvolution as well as refined spatial map construction. CARD relies on an efficient optimization algorithm for constrained maximum likelihood estimation and is scalable to spatial transcriptomics with tens of thousands of spatial locations and tens of thousands of genes. CARD is implemented as an open-source R package, freely available at www.xzlab.org/software.html
Package Content
Index: This package was not yet installed at build time.
Maintainer
Ying Ma <yingma@umich.edu>
Author(s)
Ying Ma
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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