CARD.visualize.pie: Visualize the spatial distribution of cell type proportion in...

In YingMa0107/CARD: Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics

Visualize the spatial distribution of cell type proportion in a geom scatterpie plot

Description

Visualize the spatial distribution of cell type proportion in a geom scatterpie plot

Usage

CARD.visualize.pie(
  proportion,
  spatial_location,
  colors = NULL,
  radius = NULL,
  seed = NULL
)

Arguments

proportion	Data frame, cell type proportion estimated by CARD in either original resolution or enhanced resolution.
spatial_location	Data frame, spatial location information.
colors	Vector of color names that you want to use, if NULL, we will use the color palette "Spectral" from RColorBrewer package.
radius	Numeric value about the radius of each pie chart, if NULL, we will calculate it inside the function.
seed	Seed number about generating the colors if users do not provide the colors, if NULL, we will generate it inside the function

Value

Returns a ggplot2 figure.

YingMa0107/CARD documentation built on Feb. 14, 2024, 12:23 p.m.