CARD.visualize.gene: Visualize the spatial distribution of cell type proportion

In YingMa0107/CARD: Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics

Visualize the spatial distribution of cell type proportion

Description

Visualize the spatial distribution of cell type proportion

Usage

CARD.visualize.gene(
  spatial_expression,
  spatial_location,
  gene.visualize,
  colors = colors,
  NumCols
)

Arguments

spatial_expression	Data frame, spatial gene expression in either original resolution or enhanced resolution.
spatial_location	Data frame, spatial location information.
gene.visualize	Vector of selected gene names that are interested to visualize
colors	Vector of color names that you want to use, if NULL, we will use the default color scale in virdis palette
NumCols	Numeric, number of columns in the figure panel, it depends on the number of cell types you want to visualize.

Value

Returns a ggplot2 figure.

YingMa0107/CARD documentation built on Feb. 14, 2024, 12:23 p.m.