getHighresCords: The function to sample the spatial location information for...
In YingMa0107/CARD: Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics
View source: R/CARD.SCMapping.R
getHighresCords R Documentation
The function to sample the spatial location information for each single cell
Description
The function to sample the spatial location information for each single cell
Usage
getHighresCords(Cords, numCell, shape = "Square")
Arguments
Cords
The spatial location information in the measure spatial locations, with the first and second columns represent the 2-D x-y coordinate system
numCell
a numeric value indicating the number of single cells in each measured location, we suggest 20 for ST technology, 7 for 10x Viisum and 2 for Slide-seq
shape
a character indicating whether the sampled spatial coordinates for single cells locating in a Square-like region or a Circle-like region. The center of this region is the measured spatial location in the non-single cell resolution spatial transcriptomics data. The default is "Square", the other shape is "Circle"
Value
Returns a dataframe with the sampled spatial location information for each single cell
YingMa0107/CARD documentation built on Feb. 14, 2024, 12:23 p.m.
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View source: R/CARD.SCMapping.R
| getHighresCords | R Documentation |
The function to sample the spatial location information for each single cell
Description
The function to sample the spatial location information for each single cell
Usage
getHighresCords(Cords, numCell, shape = "Square")
Arguments
Cords |
The spatial location information in the measure spatial locations, with the first and second columns represent the 2-D x-y coordinate system |
numCell |
a numeric value indicating the number of single cells in each measured location, we suggest 20 for ST technology, 7 for 10x Viisum and 2 for Slide-seq |
shape |
a character indicating whether the sampled spatial coordinates for single cells locating in a Square-like region or a Circle-like region. The center of this region is the measured spatial location in the non-single cell resolution spatial transcriptomics data. The default is "Square", the other shape is "Circle" |
Value
Returns a dataframe with the sampled spatial location information for each single cell
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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