read_10x | R Documentation |
Loads 10x output counts and converts expression to gene symbols
read_10x(expression, genes, barcodes, ensToSymbol = TRUE)
expression |
path to matrix.mtx |
genes |
path to genes.tsv |
barcodes |
path to barcodes.tsv |
ensToSymbol |
bool denoting whether or not to perform label conversion |
This version takes in three files as inputs:
matrix.mtx
genes.tsv
barcodes.tsv
These files are found in the output of "cellranger count" in a folder that looks like:
outs/filtered_gene_bc_matrices/mm10
though with the name of whichever genome you are using instead of 'mm10'
sparse count matrix with appropriate row/column names
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