read_10x_h5_v2: Read 10x HDF5 Output - CellRanger 2.0
In YosefLab/FastProjectR: Functional interpretation of single cell RNA-seq latent manifolds
read_10x_h5_v2 R Documentation
Read 10x HDF5 Output - CellRanger 2.0
Description
Loads 10x output counts and converts expression to gene symbols
Usage
read_10x_h5_v2(h5_file, ensToSymbol = TRUE)
Arguments
h5_file
path to h5 file
ensToSymbol
bool denoting whether or not to perform label conversion
Details
This version uses the h5 file produced by "cellranger count"
This file is typically in a folder that looks like:
outs/filtered_gene_bc_matrices_h5.h5
Value
sparse count matrix with appropriate row/column names
YosefLab/FastProjectR documentation built on June 13, 2024, 4:20 p.m.
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| read_10x_h5_v2 | R Documentation |
Read 10x HDF5 Output - CellRanger 2.0
Description
Loads 10x output counts and converts expression to gene symbols
Usage
read_10x_h5_v2(h5_file, ensToSymbol = TRUE)
Arguments
h5_file |
path to h5 file |
ensToSymbol |
bool denoting whether or not to perform label conversion |
Details
This version uses the h5 file produced by "cellranger count"
This file is typically in a folder that looks like:
outs/filtered_gene_bc_matrices_h5.h5
Value
sparse count matrix with appropriate row/column names
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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