read_10x_h5_v2: Read 10x HDF5 Output - CellRanger 2.0

View source: R/Utilities.R

read_10x_h5_v2R Documentation

Read 10x HDF5 Output - CellRanger 2.0

Description

Loads 10x output counts and converts expression to gene symbols

Usage

read_10x_h5_v2(h5_file, ensToSymbol = TRUE)

Arguments

h5_file

path to h5 file

ensToSymbol

bool denoting whether or not to perform label conversion

Details

This version uses the h5 file produced by "cellranger count"

This file is typically in a folder that looks like:

outs/filtered_gene_bc_matrices_h5.h5

Value

sparse count matrix with appropriate row/column names


YosefLab/FastProjectR documentation built on June 13, 2024, 4:20 p.m.