read_10x_h5_v3: Read 10x HDF5 Output - CellRanger 3.0

View source: R/Utilities.R

read_10x_h5_v3R Documentation

Read 10x HDF5 Output - CellRanger 3.0

Description

Loads 10x output counts and converts expression to gene symbols

Usage

read_10x_h5_v3(h5_file, ensToSymbol = TRUE)

Arguments

h5_file

path to h5 file

ensToSymbol

bool denoting whether or not to perform label conversion

Details

This version uses the h5 file produced by "cellranger count"

This file is typically in a folder that looks like:

outs/filtered_feature_bc_matrices_h5.h5

Value

a list with two items Expression: sparse count matrix with gene expression counts Antibody: sparse count matrix with antibody capture counts


YosefLab/FastProjectR documentation built on June 13, 2024, 4:20 p.m.