YuLab-SMU/DOSE: Disease Ontology Semantic and Enrichment analysis

This package implements five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring semantic similarities among DO terms and gene products. Enrichment analyses including hypergeometric model and gene set enrichment analysis are also implemented for discovering disease associations of high-throughput biological data.

Getting started

Package details

Bioconductor views Annotation GeneSetEnrichment MultipleComparison Pathways Software Visualization
MaintainerGuangchuang Yu <guangchuangyu@gmail.com>
URL https://yulab-smu.top/biomedical-knowledge-mining-book/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
YuLab-SMU/DOSE documentation built on Nov. 20, 2023, 10:08 a.m.