GSEA_internal | R Documentation |
generic function for gene set enrichment analysis
GSEA_internal(
geneList,
exponent,
minGSSize,
maxGSSize,
eps,
pvalueCutoff,
pAdjustMethod,
verbose,
seed = FALSE,
USER_DATA,
by = "fgsea",
...
)
geneList |
order ranked geneList |
exponent |
weight of each step |
minGSSize |
minimal size of each geneSet for analyzing |
maxGSSize |
maximal size of each geneSet for analyzing |
eps |
This parameter sets the boundary for calculating the p value. |
pvalueCutoff |
p value Cutoff |
pAdjustMethod |
p value adjustment method |
verbose |
print message or not |
seed |
set seed inside the function to make result reproducible. FALSE by default. |
USER_DATA |
annotation data |
by |
one of 'fgsea' or 'DOSE' |
... |
other parameter |
gseaResult object
Yu Guangchuang
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.