geneSim | R Documentation |
measuring similarities bewteen two gene vectors.
geneSim(
geneID1,
geneID2 = NULL,
ont = "DO",
organism = "hsa",
measure = "Wang",
combine = "BMA"
)
geneID1 |
entrez gene vector |
geneID2 |
entrez gene vector |
ont |
one of "DO" and "MPO" |
organism |
organism |
measure |
one of "Wang", "Resnik", "Rel", "Jiang", and "Lin". |
combine |
One of "max", "avg", "rcmax", "BMA" methods, for combining semantic similarity scores of multiple DO terms associated with gene/protein. |
provide two entrez gene vectors, this function will calculate their similarity.
score matrix
Guangchuang Yu http://ygc.name
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