gseNCG: NCG Gene Set Enrichment Analysis

In YuLab-SMU/DOSE: Disease Ontology Semantic and Enrichment analysis

NCG Gene Set Enrichment Analysis

Description

perform gsea analysis

Usage

gseNCG(
  geneList,
  exponent = 1,
  minGSSize = 10,
  maxGSSize = 500,
  pvalueCutoff = 0.05,
  pAdjustMethod = "BH",
  verbose = TRUE,
  seed = FALSE,
  by = "fgsea",
  ...
)

Arguments

geneList	order ranked geneList
exponent	weight of each step
minGSSize	minimal size of each geneSet for analyzing
maxGSSize	maximal size of each geneSet for analyzing
pvalueCutoff	pvalue Cutoff
pAdjustMethod	p value adjustment method
verbose	print message or not
seed	logical
by	one of 'fgsea' or 'DOSE'
...	other parameter

Value

gseaResult object

Author(s)

Yu Guangchuang

YuLab-SMU/DOSE documentation built on April 15, 2024, 9:27 p.m.