mp_cal_dca-methods: Detrended Correspondence Analysis with MPSE or tbl_mpse...

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

Detrended Correspondence Analysis with MPSE or tbl_mpse object

Description

Detrended Correspondence Analysis with MPSE or tbl_mpse object

Usage

mp_cal_dca(.data, .abundance, .dim = 3, action = "add", origin = TRUE, ...)

## S4 method for signature 'MPSE'
mp_cal_dca(.data, .abundance, .dim = 3, action = "add", origin = TRUE, ...)

## S4 method for signature 'tbl_mpse'
mp_cal_dca(.data, .abundance, .dim = 3, action = "add", origin = TRUE, ...)

## S4 method for signature 'grouped_df_mpse'
mp_cal_dca(.data, .abundance, .dim = 3, action = "add", origin = TRUE, ...)

Arguments

.data	MPSE or tbl_mpse object
.abundance	the name of abundance to be calculated.
.dim	integer The number of dimensions to be returned, default is 3.
action	character "add" joins the 'decorana' result to the object, "only" return a non-redundant tibble with the 'decorana' result. "get" return 'decorana' object can be processed with related vegan function.
origin	logical Use true origin even in detrended correspondence analysis. default is TRUE.
...	additional parameters see also 'vegan::decorana'

Value

update object or tbl according to the action.

YuLab-SMU/MicrobiotaProcess documentation built on Nov. 8, 2024, 4:37 p.m.