mp_extract_assays-methods: extract the abundance matrix from MPSE object or tbl_mpse...

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

extract the abundance matrix from MPSE object or tbl_mpse object

Description

extract the abundance matrix from MPSE object or tbl_mpse object

Usage

mp_extract_assays(x, .abundance, byRow = TRUE, ...)

## S4 method for signature 'MPSE'
mp_extract_assays(x, .abundance, byRow = TRUE, ...)

## S4 method for signature 'tbl_mpse'
mp_extract_assays(x, .abundance, byRow = TRUE, ...)

## S4 method for signature 'grouped_df_mpse'
mp_extract_assays(x, .abundance, byRow = TRUE, ...)

Arguments

x	MPSE or tbl_mpse object
.abundance	the name of abundance to be extracted.
byRow	logical if it is set TRUE, 'otu X sample' shape will return, else 'sample X otu' will return.
...	additional parameters.

Value

otu abundance a data.frame object

YuLab-SMU/MicrobiotaProcess documentation built on Nov. 8, 2024, 4:37 p.m.