mp_extract_taxonomy-methods: extract the taxonomy annotation in MPSE object

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

extract the taxonomy annotation in MPSE object

Description

extract the taxonomy annotation in MPSE object

Usage

taxonomy(x, ...)

## S4 method for signature 'MPSE'
taxonomy(x, ...)

## S4 method for signature 'tbl_mpse'
taxonomy(x, ...)

## S4 method for signature 'grouped_df_mpse'
taxonomy(x, ...)

mp_extract_taxonomy(x, ...)

## S4 method for signature 'MPSE'
mp_extract_taxonomy(x, ...)

## S4 method for signature 'tbl_mpse'
mp_extract_taxonomy(x, ...)

## S4 method for signature 'grouped_df_mpse'
mp_extract_taxonomy(x, ...)

Arguments

x	MPSE object
...	additional arguments

Value

data.frame contained taxonomy information

data.frame contained taxonomy annotation.

YuLab-SMU/MicrobiotaProcess documentation built on Nov. 8, 2024, 4:37 p.m.