mp_import_biom: building MPSE object from biom-format file.

View source: R/method-io.R

mp_import_biomR Documentation

building MPSE object from biom-format file.

Description

building MPSE object from biom-format file.

Usage

mp_import_biom(
  biomfilename,
  mapfilename = NULL,
  otutree = NULL,
  refseq = NULL,
  ...
)

Arguments

biomfilename

character the biom-format file path.

mapfilename

character, the file contained sample information, the tsv format, default is NULL.

otutree

treedata, phylo or character, the file contained reference sequences, or treedata object, which is the result parsed by functions of treeio, default is NULL.

refseq

XStringSet or character, the file contained the representation sequence file or XStringSet class to store the representation sequence, default is NULL.

...

additional parameter, which is meaningless now.

Value

MPSE-class


YuLab-SMU/MicrobiotaProcess documentation built on July 26, 2024, 4:21 a.m.