mp_import_humann_regroup: Import function to load the output of human_regroup_table in...

mp_import_humann_regroupR Documentation

Import function to load the output of human_regroup_table in HUMAnN.

Description

Import function to load the output of human_regroup_table in HUMAnN.

Usage

mp_import_humann_regroup(
  profile,
  mapfilename = NULL,
  rm.unknown = TRUE,
  keep.contribute.abundance = FALSE,
  ...
)

Arguments

profile

the output file (text format) of human_regroup_table in HUMAnN.

mapfilename

the sample information file or data.frame,

rm.unknown

logical whether remove the unmapped and ungrouped features.

keep.contribute.abundance

logical whether keep the abundance of contributed taxa, default is FALSE, it will consume more memory if it set to TRUE.

...

additional parameters, meaningless now.

Author(s)

Shuangbin Xu


YuLab-SMU/MicrobiotaProcess documentation built on July 26, 2024, 4:21 a.m.