mp_plot_upset-methods: Plotting the different number of OTU between group via UpSet...

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

Plotting the different number of OTU between group via UpSet plot

Description

Plotting the different number of OTU between group via UpSet plot

Usage

mp_plot_upset(.data, .group, .upset = NULL, ...)

## S4 method for signature 'MPSE'
mp_plot_upset(.data, .group, .upset = NULL, ...)

## S4 method for signature 'tbl_mpse'
mp_plot_upset(.data, .group, .upset = NULL, ...)

## S4 method for signature 'grouped_df_mpse'
mp_plot_upset(.data, .group, .upset = NULL, ...)

Arguments

.data	MPSE obejct or tbl_mpse object
.group	the column name of group
.upset	the column name of result after run mp_cal_upset
...	additional parameters, see also 'scale_x_upset' of 'ggupset'.

Author(s)

Shuangbin Xu

Examples

## Not run: 
data(mouse.time.mpse)
mpse <- mouse.time.mpse %>%
        mp_rrarefy(.abundance=Abundance) %>%
        mp_cal_upset(.abundance=RareAbundance, .group=time) 
mpse
p <- mpse %>% mp_plot_upset(.group=time, .upset=ggupsetOftime)
p

## End(Not run)

YuLab-SMU/MicrobiotaProcess documentation built on Nov. 8, 2024, 4:37 p.m.