mp_plot_venn-methods: Plotting the different number of OTU between groups with Venn...

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

Plotting the different number of OTU between groups with Venn Diagram.

Description

Plotting the different number of OTU between groups with Venn Diagram.

Usage

mp_plot_venn(.data, .group, .venn = NULL, ...)

## S4 method for signature 'MPSE'
mp_plot_venn(.data, .group, .venn = NULL, ...)

## S4 method for signature 'tbl_mpse'
mp_plot_venn(.data, .group, .venn = NULL, ...)

## S4 method for signature 'grouped_df_mpse'
mp_plot_venn(.data, .group, .venn = NULL, ...)

Arguments

.data	MPSE object or tbl_mpse object
.group	the column names of group to be visualized
.venn	the column names of result after run mp_cal_venn.
...	additional parameters, such as 'size', 'label_size', 'edge_size' etc, see also 'ggVennDiagram'.

Author(s)

Shuangbin Xu

Examples

## Not run: 
data(mouse.time.mpse)
mpse <- mouse.time.mpse %>%
        mp_rrarefy() %>%
        mp_cal_venn(.abundance=RareAbundance, .group=time, action="add")
mpse
p <- mpse %>% mp_plot_venn(.group=time, .venn=vennOftime) 
p

## End(Not run)

YuLab-SMU/MicrobiotaProcess documentation built on Nov. 8, 2024, 4:37 p.m.