YuLab-SMU/enrichplot
Visualization of Functional Enrichment Result

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157
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29
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YuLab-SMU/enrichplot: Visualization of Functional Enrichment Result
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API

API for YuLab-SMU/enrichplot
Visualization of Functional Enrichment Result

Global functions
.cal_jc_similarity Source code
.label_format Source code
.onAttach Source code
add_ellipse Source code
add_node_pie Source code
adj_axis Source code
append_intersect Source code
as.data.frame.compareClusterResult Source code
autofacet Man page Source code
barplot.compareClusterResult Source code
barplot.enrichResult Man page Source code
build_dist Source code
build_emap_graph Source code
cnetplot Man page
cnetplot.compareClusterResult Man page Source code
cnetplot.enrichResult Man page Source code
cnetplot.gseaResult Man page
color_palette Man page Source code
default_labeller Source code
dotplot Man page
dotplot,compareClusterResult,ANY-method Man page
dotplot,compareClusterResult-method Man page
dotplot,enrichResult-method Man page
dotplot,enrichResultList,ANY-method Man page
dotplot,enrichResultList-method Man page
dotplot,gseaResult-method Man page
dotplot,gseaResultList,ANY-method Man page
dotplot,gseaResultList-method Man page
dotplot.compareClusterResult Man page Source code
dotplot.enrichResult Man page Source code
dotplot2 Man page Source code
edge_add_alpha Source code
emapplot Man page
emapplot,compareClusterResult-method Man page
emapplot,enrichResult-method Man page
emapplot,gseaResult-method Man page
emapplot_internal Man page Source code
enrichplot Man page
enrichplot-package Man page
extract_geneSets Source code
facet_grid Man page
fc_readable Source code
fortify.compareClusterResult Man page Source code
fortify.enrichResult Man page
geom_cnet_label Man page
geom_gsea_gene Man page
get_drResult Source code
get_enrichplot_color Source code
get_ggrepel_segsize Source code
get_gsdata Source code
get_igraph Source code
get_label_diss Source code
get_label_location Source code
get_pairwise_sim Source code
get_param_change_message Source code
get_pie_data Source code
get_similarity_matrix Source code
get_word_freq Source code
get_wordcloud Source code
ggplot_add.autofacet Source code
ggtable Man page Source code
ggtitle Man page
goplot Man page
goplot,enrichResult-method Man page
goplot,gseaResult-method Man page
goplot.enrichResult Source code
graph_from_compareClusterResult Source code
graph_from_enrichResult Source code
groupNode Source code
gsInfo Man page Source code
gseadist Man page Source code
gseaplot Man page
gseaplot,gseaResult-method Man page
gseaplot.gseaResult Man page
gseaplot2 Man page
gsearank Man page
has_pairsim Source code
heatplot Man page
heatplot,enrichResult-method Man page
heatplot,gseaResult-method Man page
heatplot.enrichResult Man page Source code
hplot Man page Source code
merge_compareClusterResult Source code
node_add_alpha Source code
overlap_ratio Source code
pairwise_termsim Man page
pairwise_termsim,compareClusterResult-method Man page
pairwise_termsim,enrichResult-method Man page
pairwise_termsim,gseaResult-method Man page
pairwise_termsim.compareClusterResult Man page Source code
pairwise_termsim.enrichResult Man page Source code
plot_list Man page
plotting.clusterProfile Man page Source code
pmcplot Man page Source code
prepare_pie_category Source code
prepare_pie_data Source code
prepare_pie_gene Source code
print.enrichplotDot Source code
quiet Source code
reexports Man page
ridgeplot Man page
ridgeplot,gseaResult-method Man page
ridgeplot.gseaResult Man page Source code
set_enrichplot_color Man page Source code
ssplot Man page
ssplot,compareClusterResult-method Man page
ssplot,enrichResult-method Man page
ssplot,gseaResult-method Man page
ssplot.compareClusterResult Man page Source code
ssplot.enrichResult Man page Source code
tableGrob2 Source code
tidy_compareCluster Source code
treeplot Man page
treeplot,compareClusterResult-method Man page
treeplot,enrichResult-method Man page
treeplot,gseaResult-method Man page
treeplot.compareClusterResult Man page Source code
treeplot.enrichResult Man page Source code
update_n Source code
upsetplot Man page
upsetplot,enrichResult,ANY-method Man page
upsetplot,enrichResult-method Man page
upsetplot,gseaResult Man page
upsetplot,gseaResult-method Man page
upsetplot.compareClusterResult Source code
upsetplot.enrichResult Source code
upsetplot.gseaResult Source code
volplot Man page
volplot,enrichResult-method Man page
volplot.enrichResult Man page Source code
which_scale_fun Source code
YuLab-SMU/enrichplot documentation built on Nov. 8, 2024, 5:20 p.m.

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