ridgeplot: ridgeplot

In YuLab-SMU/enrichplot: Visualization of Functional Enrichment Result

ridgeplot

Description

ridgeline plot for GSEA result

Usage

ridgeplot(
  x,
  showCategory = 30,
  fill = "p.adjust",
  core_enrichment = TRUE,
  label_format = 30,
  ...
)

## S4 method for signature 'gseaResult'
ridgeplot(
  x,
  showCategory = 30,
  fill = "p.adjust",
  core_enrichment = TRUE,
  label_format = 30,
  ...
)

ridgeplot.gseaResult(
  x,
  showCategory = 30,
  fill = "p.adjust",
  core_enrichment = TRUE,
  label_format = 30,
  orderBy = "NES",
  decreasing = FALSE
)

Arguments

x	gseaResult object
showCategory	A number or a vector of terms. If it is a number, the first n terms will be displayed. If it is a vector of terms, the selected terms will be displayed.
fill	one of "pvalue", "p.adjust", "qvalue"
core_enrichment	whether only using core_enriched genes
label_format	a numeric value sets wrap length, alternatively a custom function to format axis labels.
...	additional parameters by default wraps names longer that 30 characters
orderBy	The order of the Y-axis
decreasing	logical. Should the orderBy order be increasing or decreasing?

Value

ggplot object

Author(s)

Guangchuang Yu

Examples

library(DOSE)
data(geneList)
x <- gseDO(geneList)
ridgeplot(x)

YuLab-SMU/enrichplot documentation built on April 15, 2024, 5:18 p.m.