barplot.enrichResult: barplot

In YuLab-SMU/enrichplot: Visualization of Functional Enrichment Result

barplot

Description

barplot of enrichResult

Usage

## S3 method for class 'enrichResult'
barplot(
  height,
  x = "Count",
  color = "p.adjust",
  showCategory = 8,
  font.size = 12,
  title = "",
  label_format = 30,
  ...
)

Arguments

height	enrichResult object
x	one of 'Count' and 'GeneRatio'
color	one of 'pvalue', 'p.adjust' and 'qvalue'
showCategory	number of categories to show
font.size	font size
title	plot title
label_format	a numeric value sets wrap length, alternatively a custom function to format axis labels. by default wraps names longer that 30 characters
...	other parameter, ignored

Value

ggplot object

Examples

library(DOSE)
data(geneList)
de <- names(geneList)[1:100]
x <- enrichDO(de)
barplot(x)
# use `showCategory` to select the displayed terms. It can be a number of a vector of terms.
barplot(x, showCategory = 10)
categorys <- c("pre-malignant neoplasm", "intestinal disease",
               "breast ductal carcinoma", "non-small cell lung carcinoma")
barplot(x, showCategory = categorys)

YuLab-SMU/enrichplot documentation built on April 15, 2024, 5:18 p.m.