volplot: volplot

In YuLab-SMU/enrichplot: Visualization of Functional Enrichment Result

volplot

Description

volcano plot for enrichment result

Usage

volplot(
  x,
  color = "zScore",
  xintercept = 1,
  yintercept = 2,
  showCategory = 5,
  label_format = 30,
  ...
)

## S4 method for signature 'enrichResult'
volplot(
  x,
  color = "zScore",
  xintercept = 1,
  yintercept = 2,
  showCategory = 5,
  label_format = 30,
  ...
)

volplot.enrichResult(
  x,
  color = "zScore",
  xintercept = 1,
  yintercept = 2,
  showCategory = 5,
  label_format = 30,
  font.size = 12,
  size = 5
)

Arguments

x	enrichment result.
color	selected variable to color the dots
xintercept	value to set x intercept
yintercept	value to set y intercept
showCategory	number of most significant enriched terms or selected terms to display determined by the variable selected to color the dots
label_format	a numeric value sets wrap length, alternatively a custom function to format axis labels.
...	Additional parameters
font.size	font size for 'theme_dose()'
size	font size to label selected categories specified by showCategory

Value

ggplot object

Author(s)

Guangchuang Yu

Examples

library(DOSE)
data(geneList)
de <- names(geneList)[1:100]
x <- enrichDO(de)
volplot(x)

YuLab-SMU/enrichplot documentation built on Sept. 5, 2024, 6:11 a.m.