gseaplot2: gseaplot2

In YuLab-SMU/enrichplot: Visualization of Functional Enrichment Result

gseaplot2

Description

GSEA plot that mimic the plot generated by broad institute's GSEA software

Usage

gseaplot2(
  x,
  geneSetID,
  title = "",
  color = "green",
  base_size = 11,
  rel_heights = c(1.5, 0.5, 1),
  subplots = 1:3,
  pvalue_table = FALSE,
  ES_geom = "line"
)

Arguments

x	gseaResult object
geneSetID	gene set ID
title	plot title
color	color of running enrichment score line
base_size	base font size
rel_heights	relative heights of subplots
subplots	which subplots to be displayed
pvalue_table	whether add pvalue table
ES_geom	geom for plotting running enrichment score, one of 'line' or 'dot'

Value

plot

Author(s)

Guangchuang Yu

YuLab-SMU/enrichplot documentation built on April 15, 2024, 5:18 p.m.