heatplot: heatplot

In YuLab-SMU/enrichplot: Visualization of Functional Enrichment Result

heatplot

Description

heatmap like plot for functional classification

Usage

heatplot(x, showCategory = 30, ...)

## S4 method for signature 'enrichResult'
heatplot(x, showCategory = 30, ...)

## S4 method for signature 'gseaResult'
heatplot(x, showCategory = 30, ...)

heatplot.enrichResult(
  x,
  showCategory = 30,
  symbol = "rect",
  foldChange = NULL,
  pvalue = NULL,
  label_format = 30
)

Arguments

x	enrichment result.
showCategory	number of enriched terms to display
...	Additional parameters
symbol	symbol of the nodes, one of "rect"(the default) and "dot" by default wraps names longer that 30 characters
foldChange	fold Change.
pvalue	pvalue of genes
label_format	a numeric value sets wrap length, alternatively a custom function to format axis labels.

Value

ggplot object

Author(s)

Guangchuang Yu

Examples

library(DOSE)
data(geneList)
de <- names(geneList)[1:100]
x <- enrichDO(de)
heatplot(x)

YuLab-SMU/enrichplot documentation built on Nov. 8, 2024, 5:20 p.m.