enrich_geneset: enrich_geneset

In YuanlongHu/yltool: The Research Tool Used By Yuanlong Hu.

Description

Over-representation test

Usage

enrich_geneset(
  genes,
  pvalueCutoff = 0.05,
  qvalueCutoff = 0.05,
  kegg_internal_data = FALSE,
  GMTset = NULL,
  useGMTset = FALSE,
  IDtoNAME = NA,
  Wikipathways = TRUE
)

Arguments

genes	res
pvalueCutoff	p-value cutoff
qvalueCutoff	q-value Cutoff
kegg_internal_data	Use kegg internal data
GMTset	gmt file
useGMTset	use geneset from gmt file
IDtoNAME	ID to name

Value

a gseaResult object

Author(s)

Yuanlong Hu

YuanlongHu/yltool documentation built on Nov. 2, 2021, 5:39 a.m.