plotExprDIM: plotExprDIM

In YuanlongHu/yltool: The Research Tool Used By Yuanlong Hu.

Description

plot PCA and t-sne

Usage

plotExprDIM(
  expr,
  feature,
  pdata = NULL,
  method,
  addEllipses = TRUE,
  ellipse_type = "confidence",
  ellipse_level = 0.95,
  tsne_perplexity = 30,
  alpha = 0.7,
  ...
)

Arguments

expr	expr
feature	feature
pdata	a vector.
method	"PCA" or "tSNE"
addEllipses	TRUE or FALSE
ellipse_type	"convex" or "confidence"
ellipse_level	0.95
tsne_perplexity	perplexity
alpha	0.7
...	other

Value

a ggplot2 object

Author(s)

Yuanlong Hu

YuanlongHu/yltool documentation built on Nov. 2, 2021, 5:39 a.m.