pathway_gsva: pathway_gsva
In YuanlongHu/yltool: The Research Tool Used By Yuanlong Hu.
Description
Usage
Arguments
Value
Author(s)
Description
Estimates GSVA enrichment scores.
Usage
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pathway_gsva(
data,
geneset,
gmt = NULL,
method = c("ssgsea", "gsva", "zscore", "plage"),
rna_seq = FALSE
)
Arguments
data
a matrix of expression values where rows correspond to genes and columns correspond to samples.
geneset
a list or dataframe
gmt
gmtfile
method
one of "ssgsea","gsva", "zscore",and "plage"
rna_seq
rna-seq data or microarray data
Value
a data.frame
Author(s)
Yuanlong Hu
YuanlongHu/yltool documentation built on Nov. 2, 2021, 5:39 a.m.
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Description Usage Arguments Value Author(s)
Description
Estimates GSVA enrichment scores.
Usage
1 2 3 4 5 6 7 | pathway_gsva(
data,
geneset,
gmt = NULL,
method = c("ssgsea", "gsva", "zscore", "plage"),
rna_seq = FALSE
)
|
Arguments
data |
a matrix of expression values where rows correspond to genes and columns correspond to samples. |
geneset |
a list or dataframe |
gmt |
gmtfile |
method |
one of "ssgsea","gsva", "zscore",and "plage" |
rna_seq |
rna-seq data or microarray data |
Value
a data.frame
Author(s)
Yuanlong Hu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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