runTwoSampleMR: runTwoSampleMR

In YuanlongHu/yltool: The Research Tool Used By Yuanlong Hu.

Description

run TwoSampleMR (single)

Usage

runTwoSampleMR(
  expID,
  outID,
  output = "harmonise",
  p1 = 5e-08,
  r2 = 0.01,
  kb = 1000,
  maf_threshold = 0.01,
  method_list = subset(mr_method_list(), use_by_default)$obj,
  proxies = TRUE
)

Arguments

expID	IDs.
outID	Outcome IDs.
output	output type, harmonise or mr.
p1	Significance threshold.
r2	Clumping r2 cut off.
kb	Clumping distance cutoff.
maf_threshold	MAF threshold to try to infer palindromic SNPs.
method_list	List of methods to use in analysis.
proxies	Look for LD tags?

Value

a MR object

Author(s)

Yuanlong Hu

YuanlongHu/yltool documentation built on Nov. 2, 2021, 5:39 a.m.