plotExprGSEAHeatmap: plotExprGSEAHeatmap
In YuanlongHu/yltool: The Research Tool Used By Yuanlong Hu.
Description
Usage
Arguments
Value
Author(s)
Description
Heatmap displaying gene expression in GSEA
Usage
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plotExprGSEAHeatmap(
res_gsea,
res_deg,
select,
sort = "logFC",
logFCCutoff = 0.1,
pvalueCutoff = 0.05,
adjpvalueCutoff = 0.1,
show_NES = TRUE
)
Arguments
res_gsea
GSEA result
res_deg
DEGs result
select
selected ID
sort
sort method
logFCCutoff
abs logFC cutoff
pvalueCutoff
p-value cutoff
adjpvalueCutoff
adjusted p-value cutoff
show_NES
Whether to show GSEA NES
Value
a ggplot2 object
Author(s)
Yuanlong Hu
YuanlongHu/yltool documentation built on Nov. 2, 2021, 5:39 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
Heatmap displaying gene expression in GSEA
Usage
1 2 3 4 5 6 7 8 9 10 | plotExprGSEAHeatmap(
res_gsea,
res_deg,
select,
sort = "logFC",
logFCCutoff = 0.1,
pvalueCutoff = 0.05,
adjpvalueCutoff = 0.1,
show_NES = TRUE
)
|
Arguments
res_gsea |
GSEA result |
res_deg |
DEGs result |
select |
selected ID |
sort |
sort method |
logFCCutoff |
abs logFC cutoff |
pvalueCutoff |
p-value cutoff |
adjpvalueCutoff |
adjusted p-value cutoff |
show_NES |
Whether to show GSEA NES |
Value
a ggplot2 object
Author(s)
Yuanlong Hu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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