enrich_gsea: enrich_gsea

In YuanlongHu/yltool: The Research Tool Used By Yuanlong Hu.

Description

GSEA

Usage

enrich_gsea(
  res,
  pvalueCutoff = 0.05,
  kegg_internal_data = FALSE,
  GMTset = NULL,
  useGMTset = FALSE,
  IDtoNAME = NA,
  na.omit = TRUE,
  Wikipathways = TRUE
)

Arguments

res	res
pvalueCutoff	p-value cutoff
kegg_internal_data	Use kegg internal data
GMTset	gmt file
useGMTset	use geneset from gmt file
IDtoNAME	ID to name
na.omit	Remove NA

Value

a gseaResult object

Author(s)

Yuanlong Hu

YuanlongHu/yltool documentation built on Nov. 2, 2021, 5:39 a.m.