Man pages for YulongNiu/KEGG_BioCyc_API
A package for providing KEGG and BioCyc databases API in R
| convKEGG | KEGG convert function |
| CutSeqInterval | Cut vectors |
| getcontent | Retreive grepexpr content |
| getCycGeneInfo | Get one gene information from BioCyc. |
| getCycGenesList | Get whole genes/proteins list |
| getCycPhylo | Get species from BioCyc |
| getCycSpeTU | Get whole TU information from a given species |
| getCycTUfGene | Get TU from ID. |
| getCycTUInfo | Get one TU information |
| getKEGGGeneMotif | Get motif information from KEGG |
| getKEGGGeneSeq | Get protein and gene sequences |
| getKEGGKO | Get KEGG orthology. |
| getKEGGPathAnno | List pathway of a given species ID |
| getKEGGPathGenes | List pathways and genes of a given KEGG species ID |
| getKEGGPhylo | Get species list from KEGG. |
| getKEGGTIDGeneSeq | KEGG Database Additional API - Get mutiple nucleotide acid... |
| getNCBITaxo | Get NCBI taxonomy information |
| getProID | Get whole KEGG IDs and annotation |
| KEGGMotifList | Get motif list from KEGG. |
| singleTIDSeq | Get protein and gene sequences from T numbers |
| testLen | Test length is 0 or not |
| transGeneIDKEGG2Cyc | Transfer KEGG ID to BioCyc ID. |
| transPhyloCyc2NCBI | Get NCBI Taxonomy ID From BioCyc species ID |
| transPhyloKEGG2NCBI | Get NCBI Taxonomy ID From KEGG ID |
| webTable | Get R matrix from weblink |
| xmlNodeAttr | Get all nodes attributes directly from the XML file. |
| xmlNodeVal | Get all nodes value directly from the XML file. |
