convKEGG | KEGG convert function |
CutSeqInterval | Cut vectors |
getcontent | Retreive grepexpr content |
getCycGeneInfo | Get one gene information from BioCyc. |
getCycGenesList | Get whole genes/proteins list |
getCycPhylo | Get species from BioCyc |
getCycSpeTU | Get whole TU information from a given species |
getCycTUfGene | Get TU from ID. |
getCycTUInfo | Get one TU information |
getKEGGGeneMotif | Get motif information from KEGG |
getKEGGGeneSeq | Get protein and gene sequences |
getKEGGKO | Get KEGG orthology. |
getKEGGPathAnno | List pathway of a given species ID |
getKEGGPathGenes | List pathways and genes of a given KEGG species ID |
getKEGGPhylo | Get species list from KEGG. |
getKEGGTIDGeneSeq | KEGG Database Additional API - Get mutiple nucleotide acid... |
getNCBITaxo | Get NCBI taxonomy information |
getProID | Get whole KEGG IDs and annotation |
KEGGMotifList | Get motif list from KEGG. |
singleTIDSeq | Get protein and gene sequences from T numbers |
testLen | Test length is 0 or not |
transGeneIDKEGG2Cyc | Transfer KEGG ID to BioCyc ID. |
transPhyloCyc2NCBI | Get NCBI Taxonomy ID From BioCyc species ID |
transPhyloKEGG2NCBI | Get NCBI Taxonomy ID From KEGG ID |
webTable | Get R matrix from weblink |
xmlNodeAttr | Get all nodes attributes directly from the XML file. |
xmlNodeVal | Get all nodes value directly from the XML file. |
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