Description Usage Arguments Details Value Author(s) Examples
BioCyc Database Additional API - Get the NCBI taxonomy ID from a given BioCyc ID
1 | transPhyloCyc2NCBI(cycID, n = 4)
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cycID |
The cyc species ID. The KEGG support multiple species ID, for example c('HUMAN', 'MOUSE', 'ECOLI'). |
n |
The number of CPUs or processors, and the default value is 4. |
NCBI taxonomy ID is used as unique ID accoss cyc and BioCyc databases. This functions is used to get the corresponding NCBI Taxonomy ID from BioCyc.If BioCyc has no official NCBI taxonomy ID, it will return a character with length of 0 (it looks like "").
The corresponding NCBI Taxonomy ID in character vector.
Yulong Niu niuylscu@gmail.com
1 2 3 4 5 6 7 8 9 | # get human, mouse, and Ecoli NCBI taxonomy ID with 2 threads
transPhyloCyc2NCBI(c('HUMAN', 'MOUSE', 'ECOLI'), n = 2)
## Not run:
# transfer all BioCyc species ID to NCBI taxonomy ID
wBiocycSpe <- getCycPhylo(whole = TRUE)
wNCBISpe <- transPhyloCyc2NCBI(wBiocycSpe[, 1])
## End(Not run)
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