Description Usage Arguments Details Value Author(s) Examples
BioCyc Database API - Get species information from BioCyc.
1 | getCycPhylo(speList, speType = "BioCyc", whole = FALSE)
|
speList |
The species list that is a vector like 'c("HUMAN", "ECOLI", "ZMOB579138")'. The input speList should be consistent with the parameter 'speType'. |
speType |
It supports two types: 'BioCyc' and 'regexpr'. BioCyc type is the BioCyc species ID, for exmaple 'HUMAN' is the BioCyc ID for the Homo sapiens.The 'regexpr' is used for regulare expression search with the Latin name for example 'Escherichia coli'. |
whole |
Whether or not get the whole BioCyc species list, and the default value is FALSE. |
Get the BioCyc species information including the BioCyc species ID and the Latin name.
Matrix of species information.
Yulong Niu niuylscu@gmail.com
1 2 3 4 5 6 7 8 9 10 | # search species list from BioCyc ID
getCycPhylo(c('HUMAN', 'ECOLI', 'ZMOB579138'), speType = 'BioCyc')
# search species whose names include 'Escherichia coli'
getCycPhylo('Escherichia coli', speType = 'regexpr')
## Not run:
# get whole BioCyc species information table
getCycPhylo(whole = TRUE)
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.