Description Usage Arguments Details Value Author(s)
KEGG Database Additional API - Get nucleotide acid and amino acid sequences according to the T numbers
1 | singleTIDSeq(TID, seqType = "aaseq")
|
TID |
The T number ID for the protein or gene. |
seqType |
Choose nucleotide acid ('ntseq') or amino acid ('aaseq') seqences, and the default is amino acid sequences. |
Get protein and gene sequences from KEGG T number in fasta format. As there is no direct API for retrieving the sequence from T number, for example "T10017:100009". The fasta sequence is extract from a webpage like "http://www.genome.jp/dbget-bin/www_bget?-f+-n+a+t10017:100009". The function singleTIDSeq() get a sequence one time, and the function getKEGGTIDGeneSeq() provides a parallel way to download sequences.
A BStringSet
Yulong Niu niuylscu@gmail.com
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