Description Usage Arguments Value Author(s) References See Also Examples
Get mutiple protein and gene sequences from KEGG T number in fasta format. As there is no direct API for retrieving the sequence from T number, for example "T10017:100009". The fasta sequence is extract from a webpage like "http://www.genome.jp/dbget-bin/www_bget?-f+-n+a+t10017:100009".
1 | getKEGGTIDGeneSeq(TIDs, seqType = "aaseq", n = 4)
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TIDs |
A vector of T number IDs. for the protein or gene. |
seqType |
Choose nucleotide acid (ntseq) or amino acid (aaseq) seqences, and the default is amino acid sequences. |
n |
The number of CPUs or processors, and the default value is 4. |
A BStringSet
Yulong Niu niuylscu@gmail.com
http://www.genome.jp/dbget-bin/www_bget?-f+-n+a+t10017:100009
http://www.genome.jp/dbget-bin/www_bget?-f+-n+n+t10017:100009
getKEGGGeneSeq
1 | tNumMultiSeqs <- getKEGGTIDGeneSeq(c('T10017:100009', 'T10017:100036', 'T10017:100044'), n = 2)
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