BIT.Simulation: Binomial Tree Simulation

In ZRChao/LRTT: Differential Abundance Analysis for Microbiome data incorpating phylogeney

Description

Function to do simulation with multinomial distribution based on the tree structure.

Usage

BIT.Sim(p, seed = 2, N, tree, prob1, prob2)

Arguments

p	OTU numbers
seed	random seeds
N	sample size
tree	tree structure with phylo types
prob1, prob2	the probability of each branch along the tree which both is one vector with length of the branches

Details

You can random set the probability of the branches, finally use function Prob.mult() to see which OTU on the leafs is differential one.

Value

Return one count matrix of the OTU and internal nodes.

Author(s)

Chao ZHOU

See Also

Prob.mult

ZRChao/LRTT documentation built on May 17, 2019, 6:36 p.m.